SNP Profiles matching MARPER 38

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
TTGGAACCGGAACCCTGGCCAAGGTTCC
1._RUQ_897
_GGAACC_AACCCTGGCC_GG_CC
2._RUQ_468
_GGAACC_AACCCTGGCC_GG_CC
3._MARPER_28
TTGGAACCGGAACCTTGGCCAAGGTTCC
4._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
5._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
6._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
7._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
8._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
9._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
10._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
11._POUND_25_/A
TTGGAACCGGAACCTTGGCCAAGG_CC
12._NA_286
TTGGAACCGGAACCCCGGCCAAGG_CC
13._NA_286
TTGGAACCGGAACCCCGGCCAAGG_CC
14._IMC_96
ATGGAGCCGGAACCCTGGCCAAGG__
15._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG_CC
16._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG_CC
17._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG_CC
18._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG_CC
19._RUQ_801
_GGAACC_AACCCCGGCC_GG_CC
20._RUQ_1587
_GGAACC_AACCCCGGCC_GG_CC
21._RUQ_1588
_GGAACC_AACCTTGGCC_GG_CC
22._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
23._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
24._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
25._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
26._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
27._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
28._IMC_96
ATGGAGCCGGAACCCTGGCCAAGG_CT
29._IMC_96
ATGGAGCCGGAACCCTGGCCAAGG_CT
30._IMC_96
ATGGAGCCGGAACCCTGGCCAAGG_CT
31._MATINA_2_/8
TTGGAACTGGAACCTTGGCCAA-TTCC
32._NA_286
TTGGAACCGGAACCCCGGCCAAGG_CC
33._GC-01-101-5-18
TTGGAACCGGAACCCCGGCCAAGGGGCC
34._GC-01-101-5-18
TTGGAACCGGAACCCCGGCCAAGGGGCC
35._GC-08-255-8-23
ATGGAGCCGGAACCCTGGCCAAGGGG_
36._NA_670
TTGGAGCCGGAACCCTGGCCAAGG_CC
37._NA_670
TTGGAGCCGGAACCCTGGCCAAGG_CC
38._NA_670
TTGGAGCCGGAACCCTGGCCAAGG_CC
39._NA_670
TTGGAGCCGGAACCCTGGCCAAGG_CC
40._GC-08-165-4-08
TTGGAGCCGGAACCCTGGCCAAGGGGCC
41._GC-08-165-4-08
TTGGAGCCGGAACCCTGGCCAAGGGGCC
42._GC-08-165-4-08
TTGGAGCCGGAACCCTGGCCAAGGGGCC
43._GC-08-165-4-08
TTGGAGCCGGAACCCTGGCCAAGGGGCC
44._RUQ_1238
TTGGAGCCGGAACCCTGGCCAAGG_CC
45._NA_670
TTGGAGCCGGAACCCTGGCCAAGG_CC
46._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG_CC
47._SPA_9_[COL]
TTGGAACTGGAACCTTGGCCAAGG_CC
48._MARPER_16
TTGGGGCCGGAACCTTGGCCAAGGTTCC
 15161718192021222324252627 
_Input profile
GGAATTGGAGAACCTTAATTCGAACCX_X
1._RUQ_897
___GG_____TTCGAA_X_X
2._RUQ_468
___GG_____TTGGAA_X_X
3._MARPER_28
GGAATTGGAGAACCTTAATTCCAACCX_X
4._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
5._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
6._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
7._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
8._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
9._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
10._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
11._POUND_25_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
12._NA_286
GGAATTGGAAAACCTTAATTGGAACCX_X
13._NA_286
GGAATTGGAAAACCTTAATTGGAACCX_X
14._IMC_96
GGAATTGGGGAACCTTAATTCGAACCX_X
15._POUND_5_/C
GGAATTGGGGAACCTT_TTGGAACCX_X
16._POUND_5_/C
GGAATTGGGGAACCTT_TTGGAACCX_X
17._POUND_5_/C
GGAATTGGGGAACCTT_TTGGAACCX_X
18._POUND_5_/C
GGAATTGGGGAACCTT_TTGGAACCX_X
19._RUQ_801
___GG_____TTGGAA_X_X
20._RUQ_1587
___GG_____TTGGAA_X_X
21._RUQ_1588
___AG_____TTCGAA_X_X
22._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
23._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
24._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
25._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
26._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
27._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
28._IMC_96
GGAATTGGGGAACCTTAATTCGAACCX_X
29._IMC_96
GGAATTGGGGAACCTTAATTCGAACCX_X
30._IMC_96
GGAATTGGGGAACCTTAATTCGAACCX_X
31._MATINA_2_/8
GGAATTAGGGAACCTTAATTCGAACCX_X
32._NA_286
GGAATTGGAAAACCTTACTTGGAACCX_X
33._GC-01-101-5-18
GGAATTGGAAAACCTTAATTGGAACCX_X
34._GC-01-101-5-18
GGAATTGGAAAACCTTAATTGGAACCX_X
35._GC-08-255-8-23
GGAATTGGGGAACCTTAATTCGAACCX_X
36._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
37._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
38._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
39._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
40._GC-08-165-4-08
GGAATTGGGGAACCTT_TTGGAACCX_X
41._GC-08-165-4-08
GGAATTGGGGAACCTT_TTGGAACCX_X
42._GC-08-165-4-08
GGAATTGGGGAACCTT_TTGGAACCX_X
43._GC-08-165-4-08
GGAATTGGGGAACCTT_TTGGAACCX_X
44._RUQ_1238
GGAATTAGAGAACTTTAATTCCAGCCX_X
45._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
46._POUND_5_/C
GGAATTGGGGAACCTTCCTTGGAACCX_X
47._SPA_9_[COL]
GGAATTAGGGAACCTTACTTCGAACCX_X
48._MARPER_16
GGAATTGGAA-CCTTAATTCC-CCX_X

Input profile: MARPER_38

 
 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

1._CRU_70 RUQ_897

identical
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_756 RUQ_468

96.4 %
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._MARPER_28

96.3 %
27 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

4._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

6._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

7._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

9._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

10._POUND_2_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

11._POUND_25_/A

96.2 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

12._NA_286

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

13._NA_286

94.2 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._IMC_96

94 %
25 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8823 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._POUND_5_/C

94 %
25 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._POUND_5_/C

94 %
25 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

17._POUND_5_/C

94 %
25 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

18._POUND_5_/C

94 %
25 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

19._NA_149 RUQ_801

92.9 %
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_702 RUQ_1587

92.9 %
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._NA_710 RUQ_1588

92.9 %
14 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._POUND_2_/A GC-01-093-5-10

92.6 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._POUND_2_/A GC-01-093-5-10

92.6 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._POUND_2_/A GC-01-093-5-10

92.6 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

92.6 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

92.6 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

27._POUND_2_/A GC-01-093-5-10

92.6 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._IMC_96

92.3 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8823 6
 Dapeng Zhang, 2016

29._IMC_96

92.3 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8823 5
 Dapeng Zhang, 2016

30._IMC_96

92.3 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8823 2
 Dapeng Zhang, 2016

31._MATINA_2_/8

92.3 %
26 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B106 T16
 Dapeng Zhang, 2014

32._NA_286

92.3 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

33._NA_286 GC-01-101-5-18

90.7 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

34._NA_286 GC-01-101-5-18

90.7 %
27 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

35._IMC_96 GC-08-255-8-23

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

36._NA_670

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5422 5 > FP
 Dapeng Zhang, 2016

37._NA_670

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5422 4 > FP
 Dapeng Zhang, 2016

38._NA_670

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5422 3 > FP
 Dapeng Zhang, 2016

39._NA_670

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5422 2 > FP
 Dapeng Zhang, 2016

40._POUND_5_/C GC-08-165-4-08

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

41._POUND_5_/C GC-08-165-4-08

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

42._POUND_5_/C GC-08-165-4-08

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

43._POUND_5_/C GC-08-165-4-08

90.4 %
26 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

44._NA_670 RUQ_1238

90.4 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

45._NA_670

90.4 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D317 T4
 Dapeng Zhang, 2016

46._POUND_5_/C

90.4 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

47._SPA_9_[COL]

90.4 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

48._MARPER_16

90 %
25 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 750A
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520